PH01000391G0650's details annotation
1.Annotation
ICBR annotation: LSM domain containing protein, expressed
Blast result AT1G65700 : 1.70E-27
Blast annotation: Small nuclear ribonucleoprotein family protein
2.Location
Scaffold: PH01000391
Strand: +
| Region | Start | End |
| gene | 479511 | 483965 |
| mRNA | 479511 | 483965 |
| exon | 479511 | 480106 |
| exon | 480427 | 480501 |
| exon | 481473 | 481551 |
| exon | 482020 | 482123 |
| exon | 483133 | 483185 |
| exon | 483373 | 483965 |
| CDS | 479966 | 480106 |
| CDS | 480427 | 480501 |
| CDS | 481473 | 481551 |
| CDS | 482020 | 482123 |
| CDS | 483133 | 483185 |
| CDS | 483373 | 483463 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000886 | Spliceosome RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | U6 snRNA-associated Sm-like protein LSm8 | ko03041 | K12627 |
| RNA degradation | U6 snRNA-associated Sm-like protein LSm8 | ko03018 | K12627 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.