CFinderM000886's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Spliceosome0.001603435KEGG
RNA_degradation0.030405325KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000391G0650Small nuclear ribonucleoprotein family proteinAT1G65700 (1.70E-27)
PH01000844G0650Protein of unknown function (DUF630 and DUF632)AT4G39790 (2.80E-39)
PH01001015G0430RNA-binding (RRM/RBD/RNP motifs) family proteinAT1G02840 (3.20E-60)
PH01002107G0090-- (-)
PH01002800G0100-- (-)
PH01004186G0100-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000454DNA replication, synthesis of RNA primer,
DNA primase activity,
details
CFinderM001109RLK-Pelle_LRR-VI-2 (from iTAK)
regulation of Rab GTPase activity,
Spliceosome
details
CFinderM001279cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001281phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
cellular protein metabolic process,
Phagosome
details
CFinderM001358spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
details
CFinderM001361transcription factor TFIIF complex,
protein_oligomerization
cell communication,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
phosphatidylinositol binding,
chaperone binding,
bHLH Transcription_Regulator(from PlantTFDB)
details
CFinderM001372Spliceosome
GT32 GlycosylTransferases
Golgi stack,
AGC_NDR (from iTAK)
GTnc GlycosylTransferases
thiol oxidase activity,
nucleotide binding,
snRNA_binding
details
CFinderM001409Whirly Transcription_Regulator(from PlantTFDB)
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
phosphatidylinositol N-acetylglucosaminyltransferase activity,
GPI anchor biosynthetic process,
details
CFinderM001680COPII_vesicle_coating
SET Transcription_Regulator(from iTAK)
potassium_ion_transmembrane_transport
details
CFinderM001805Golgi vesicle transport,
vesicle-mediated transport,
Spliceosome
details
CFinderM001814Spliceosome
nucleotide binding,
snRNA_binding
nuclear mRNA splicing, via spliceosome,
phospholipid transport,
phospholipid-translocating ATPase activity,
cation transport,
details

4.Expression profilings