PH01004186G0100's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01004186
Strand: -
| Region | Start | End |
| gene | 81967 | 89217 |
| mRNA | 81967 | 89217 |
| exon | 81967 | 84597 |
| exon | 85125 | 85612 |
| exon | 85788 | 85967 |
| exon | 86458 | 89217 |
| CDS | 83972 | 84597 |
| CDS | 85125 | 85612 |
| CDS | 85788 | 85967 |
| CDS | 86458 | 86696 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000454 | DNA replication, synthesis of RNA primer, DNA primase activity, |
| coexpression network | CFinderM000886 | Spliceosome RNA_degradation |
| coexpression network | CFinderM001358 | spliceosomal complex, nuclear mRNA splicing, via spliceosome, |
| coexpression network | CFinderM001361 | transcription factor TFIIF complex, protein_oligomerization cell communication, transcription initiation from RNA polymerase II promoter, Basal_transcription_factors phosphatidylinositol binding, chaperone binding, bHLH Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001814 | Spliceosome nucleotide binding, snRNA_binding nuclear mRNA splicing, via spliceosome, phospholipid transport, phospholipid-translocating ATPase activity, cation transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.