PH01001015G0430's details annotation
1.Annotation
ICBR annotation: NIN, putative, expressed
Blast result AT1G02840 : 3.20E-60
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01001015
Strand: -
| Region | Start | End |
| gene | 328687 | 344030 |
| mRNA | 328687 | 344030 |
| exon | 328687 | 329790 |
| exon | 329824 | 329999 |
| exon | 330078 | 330397 |
| exon | 330460 | 331277 |
| exon | 331438 | 331685 |
| exon | 331839 | 332012 |
| exon | 332213 | 332339 |
| exon | 333168 | 333267 |
| exon | 334269 | 334305 |
| exon | 334987 | 335020 |
| exon | 339820 | 339864 |
| exon | 339933 | 340018 |
| exon | 340099 | 340155 |
| exon | 340393 | 340442 |
| exon | 342080 | 342172 |
| exon | 342235 | 342243 |
| exon | 342363 | 342468 |
| exon | 342549 | 342623 |
| exon | 342812 | 342877 |
| exon | 343263 | 344030 |
| CDS | 329205 | 329790 |
| CDS | 329824 | 329999 |
| CDS | 330078 | 330397 |
| CDS | 330460 | 331277 |
| CDS | 331438 | 331685 |
| CDS | 331839 | 332012 |
| CDS | 332213 | 332339 |
| CDS | 333168 | 333267 |
| CDS | 334269 | 334305 |
| CDS | 334987 | 335020 |
| CDS | 339820 | 339864 |
| CDS | 339933 | 340018 |
| CDS | 340099 | 340155 |
| CDS | 340393 | 340442 |
| CDS | 342080 | 342172 |
| CDS | 342235 | 342243 |
| CDS | 342363 | 342468 |
| CDS | 342549 | 342623 |
| CDS | 342812 | 342877 |
| CDS | 343263 | 343439 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000454 | DNA replication, synthesis of RNA primer, DNA primase activity, |
| coexpression network | CFinderM000886 | Spliceosome RNA_degradation |
| coexpression network | CFinderM001109 | RLK-Pelle_LRR-VI-2 (from iTAK) regulation of Rab GTPase activity, Spliceosome |
| coexpression network | CFinderM001372 | Spliceosome GT32 GlycosylTransferases Golgi stack, AGC_NDR (from iTAK) GTnc GlycosylTransferases thiol oxidase activity, nucleotide binding, snRNA_binding |
| coexpression network | CFinderM001805 | Golgi vesicle transport, vesicle-mediated transport, Spliceosome |
| coexpression network | CFinderM001814 | Spliceosome nucleotide binding, snRNA_binding nuclear mRNA splicing, via spliceosome, phospholipid transport, phospholipid-translocating ATPase activity, cation transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 39 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | splicing factor, arginine/serine-rich 1/9 | ko03041 | K12890 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.