PH01000393G0240's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G03130 : 9.40E-32
Blast annotation: BRCT domain-containing DNA repair protein
2.Location
Scaffold: PH01000393
Strand: -
| Region | Start | End |
| gene | 162420 | 165675 |
| mRNA | 162420 | 165675 |
| exon | 162420 | 163464 |
| exon | 163566 | 165675 |
| CDS | 162994 | 163464 |
| CDS | 163566 | 165122 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000568 | nuclear chromosome, Mismatch_repair Mismatch_repair mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16770.4 | RTT107_BRCT_5 | 490 | 581 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.