PH01000399G0720's details annotation
1.Annotation
ICBR annotation: BURP domain containing protein, expressed
Blast result AT1G70370 : 4.00E-170
Blast annotation: polygalacturonase 2
2.Location
Scaffold: PH01000399
Strand: +
| Region | Start | End |
| gene | 565494 | 567976 |
| mRNA | 565494 | 567976 |
| exon | 565494 | 567976 |
| CDS | 565552 | 567441 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03181.14 | BURP | 417 | 626 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.