Gene details

Annotation of co-expression genes

PH01000408G0460's details annotation

1.Annotation

ICBR annotation: flap endonuclease, putative, expressed

Blast result AT3G28030 : 0.00E+00
Blast annotation: 5-3 exonuclease family protein

2.Location

Scaffold: PH01000408
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000234	single-stranded DNA binding, LUG Transcription_Regulator(from iTAK) G-protein coupled receptor activity, nucleotide-excision repair, G-protein coupled receptor signaling pathway, Nucleotide_excision_repair nuclease activity, endonuclease activity, DNA repair,
coexpression network	CFinderM000641	nucleotide-excision repair, Nucleotide_excision_repair single-stranded DNA binding, protein binding, nuclease activity, endonuclease activity, DNA repair,
coexpression network	CFinderM001445	Nucleotide_excision_repair nucleotide-excision repair, endonuclease activity, nuclease activity, single-stranded DNA binding, protein binding, DNA repair, protein ubiquitination,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Nucleotide excision repair	DNA excision repair protein ERCC-5	ko03420	K10846

10.Gene Ontology

GO Accession	GO Annotation
GO:0003677	DNA binding
GO:0003697	single-stranded DNA binding
GO:0003824	catalytic activity
GO:0004518	nuclease activity
GO:0004519	endonuclease activity
GO:0005634	nucleus
GO:0006281	DNA repair
GO:0006289	nucleotide-excision repair
GO:0016788	hydrolase activity, acting on ester bonds

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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