CFinderM001445's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Nucleotide_excision_repair0.016139197KEGG
nucleotide-excision repair,0.027447194GO:0006289
endonuclease activity,0.04235304GO:0004519
nuclease activity,0.04235304GO:0004518
single-stranded DNA binding,0.04235304GO:0003697
protein binding,0.045910846GO:0005515
DNA repair,0.048036399GO:0006281
protein ubiquitination,0.048036399GO:0016567

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000038G1730dentin sialophosphoprotein-relatedAT3G21290 (2.50E-79)
PH01000097G0900F-box family proteinAT4G33210 (0.00E+00)
PH01000163G0460Telomerase activating protein Est1AT5G19400 (2.00E-157)
PH01000213G0510F-box family proteinAT4G33210 (0.00E+00)
PH01000408G04605-3 exonuclease family proteinAT3G28030 (0.00E+00)
PH01001327G0480-- (-)
PH01003261G0020RING/U-box superfamily protein with ARM repeat domainAT2G23140 (0.00E+00)
PH01004060G0120G2484-1 proteinAT4G17330 (5.00E-165)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000234single-stranded DNA binding,
LUG Transcription_Regulator(from iTAK)
G-protein coupled receptor activity,
nucleotide-excision repair,
G-protein coupled receptor signaling pathway,
Nucleotide_excision_repair
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000402spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
GRAS Transcription_Regulator(from PlantTFDB)
protein binding,
Spliceosome
details
CFinderM000403GRAS Transcription_Regulator(from PlantTFDB)
details
CFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM000641nucleotide-excision repair,
Nucleotide_excision_repair
single-stranded DNA binding,
protein binding,
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000725Proteasome
ATP synthesis coupled proton transport,
protein catabolic process,
details
CFinderM000753GH27 Glycoside_Hydrolases
Glycosphingolipid_biosynthesis_-_globo_series
Sphingolipid_metabolism
Glycerolipid_metabolism
Galactose_metabolism
details
CFinderM000970Protein_processing_in_endoplasmic_reticulum
C3H Transcription_Regulator(from PlantTFDB)
RNA_transport
details
CFinderM000971C3H Transcription_Regulator(from PlantTFDB)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
RNA_transport
details
CFinderM001291ubiquitin-dependent protein catabolic process,
details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001602SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
details
CFinderM001741protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
details
CFinderM001819SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
details

4.Expression profilings