CFinderM001291's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
ubiquitin-dependent protein catabolic process,0.033507295GO:0006511

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000038G1730dentin sialophosphoprotein-relatedAT3G21290 (2.50E-79)
PH01000182G0670-- (-)
PH01000311G0400-AT3G17740 (7.00E-180)
PH01001121G0340ubiquitin-specific protease 5AT2G40930 (6.00E-104)
PH01001572G0060Cleavage and polyadenylation specificity factor (CPSF) A subunit proteinAT3G11960 (0.00E+00)
PH01002929G0150Ubiquitin-like superfamily proteinAT5G42220 (1.20E-81)
PH01003584G0130tRNA arginine adenosine deaminaseAT1G68720 (7.70E-61)
PH01007247G0010RING/U-box superfamily proteinAT3G62240 (2.00E-143)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000234single-stranded DNA binding,
LUG Transcription_Regulator(from iTAK)
G-protein coupled receptor activity,
nucleotide-excision repair,
G-protein coupled receptor signaling pathway,
Nucleotide_excision_repair
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000944TKL-Pl-6 (from iTAK)
Ubiquitin_mediated_proteolysis
details
CFinderM000945Protein_processing_in_endoplasmic_reticulum
details
CFinderM001338GT41 GlycosylTransferases
positive regulation of translational elongation,
positive regulation of translational termination,
translational frameshifting,
peptidyl-lysine modification to hypusine,
RNA_degradation
protein binding,
ribosome binding,
translation elongation factor activity,
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details
CFinderM001459protein binding,
protein folding,
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
Nucleotide_excision_repair
RNA_degradation
Ubiquitin_mediated_proteolysis
details
CFinderM001602SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
details
CFinderM001731Peroxisome
Fatty_acid_metabolism
details
CFinderM001741protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
details
CFinderM001777Ubiquitin_mediated_proteolysis
protein folding,
details

4.Expression profilings