PH01001572G0060's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor, putative, expressed
Blast result AT3G11960 : 0.00E+00
Blast annotation: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
2.Location
Scaffold: PH01001572
Strand: +
| Region | Start | End |
| gene | 44694 | 53001 |
| mRNA | 44694 | 53001 |
| exon | 44694 | 45489 |
| exon | 46153 | 46287 |
| exon | 46410 | 46489 |
| exon | 50225 | 50313 |
| exon | 50462 | 50597 |
| exon | 50698 | 52603 |
| exon | 52801 | 53001 |
| CDS | 45262 | 45489 |
| CDS | 46153 | 46287 |
| CDS | 46410 | 46489 |
| CDS | 50225 | 50313 |
| CDS | 50462 | 50597 |
| CDS | 50698 | 52603 |
| CDS | 52801 | 52827 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001291 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001731 | Peroxisome Fatty_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10433.8 | MMS1_N | 148 | 651 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.