Gene details

Annotation of co-expression genes

PH01002929G0150's details annotation

1.Annotation

ICBR annotation: ubiquitin family protein, putative, expressed

Blast result AT5G42220 : 1.20E-81
Blast annotation: Ubiquitin-like superfamily protein

2.Location

Scaffold: PH01002929
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001291	ubiquitin-dependent protein catabolic process,
coexpression network	CFinderM001338	GT41 GlycosylTransferases positive regulation of translational elongation, positive regulation of translational termination, translational frameshifting, peptidyl-lysine modification to hypusine, RNA_degradation protein binding, ribosome binding, translation elongation factor activity,
coexpression network	CFinderM001459	protein binding, protein folding, peptidyl-prolyl cis-trans isomerase activity, nucleic acid binding, Nucleotide_excision_repair RNA_degradation Ubiquitin_mediated_proteolysis
coexpression network	CFinderM001777	Ubiquitin_mediated_proteolysis protein folding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00240.22	ubiquitin	26	84

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0005515	protein binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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