CFinderM000403's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
GRAS Transcription_Regulator(from PlantTFDB)0.02512972GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000096G0240RING/U-box superfamily proteinAT4G03000 (1.50E-55)
PH01000097G0900F-box family proteinAT4G33210 (0.00E+00)
PH01000213G0510F-box family proteinAT4G33210 (0.00E+00)
PH01000258G0820Homeotic gene regulatorAT3G06010 (1.00E-145)
PH01000408G0040cyclin-relatedAT3G19650 (2.00E-15)
PH01000519G0370DCD (Development and Cell Death) domain proteinAT2G32910 (2.90E-32)
PH01001761G0380GRAS family transcription factorAT2G37650 (1.00E-162)
PH01003279G0190MIF4G domain-containing protein / MA3 domain-containing proteinAT1G80930 (1.80E-92)
PH01004858G0060SMAD/FHA domain-containing protein AT5G38840 (4.70E-44)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000402spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
GRAS Transcription_Regulator(from PlantTFDB)
protein binding,
Spliceosome
details
CFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM000641nucleotide-excision repair,
Nucleotide_excision_repair
single-stranded DNA binding,
protein binding,
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000971C3H Transcription_Regulator(from PlantTFDB)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
RNA_transport
details
CFinderM001144cullin-RING ubiquitin ligase complex,
details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details

4.Expression profilings


Show details about module gene expression profiling