CFinderM001819's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SNF2 Transcription_Regulator(from iTAK)0.01972805GFam
cis-Golgi network,0.033797088GO:0005801
mRNA_surveillance_pathway0.046899693KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000037G1230CTC-interacting domain 9AT3G14450 (2.50E-96)
PH01000155G1180nucleic acid bindingAT1G27750 (3.90E-82)
PH01000163G0460Telomerase activating protein Est1AT5G19400 (2.00E-157)
PH01000190G0200SNARE-like superfamily proteinAT1G51160 (3.00E-68)
PH01000207G1290GDSL-like Lipase/Acylhydrolase superfamily proteinAT1G56670 (7.40E-66)
PH01000394G0450Telomerase activating protein Est1AT5G19400 (4.00E-176)
PH01000668G0460histone mono-ubiquitination 1AT2G44950 (2.00E-171)
PH01001067G0360SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-relatedAT1G50410 (0.00E+00)
PH01001189G0100Telomerase activating protein Est1AT5G19400 (1.20E-97)
PH01001953G0280RAB GTPase homolog A1DAT4G18800 (7.20E-98)
PH01002064G0120embryo defective 2423AT3G48470 (9.00E-174)
PH01003792G0020Pentatricopeptide repeat (PPR) superfamily proteinAT2G26790 (2.00E-102)
PH01004547G0060IAP-like protein 1AT1G17210 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000590Ribosome
translation,
structural constituent of ribosome,
SNF2 Transcription_Regulator(from iTAK)
intracellular,
RNA_degradation
details
CFinderM000729positive_regulation_of_transcription,_DNA-templated
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
TKL_CTR1-DRK-2 (from iTAK)
mRNA_surveillance_pathway
details
CFinderM000732SNF2 Transcription_Regulator(from iTAK)
transferase activity, transferring pentosyl groups,
mRNA_surveillance_pathway
details
CFinderM000944TKL-Pl-6 (from iTAK)
Ubiquitin_mediated_proteolysis
details
CFinderM000945Protein_processing_in_endoplasmic_reticulum
details
CFinderM000977mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
defense response,
details
CFinderM001202mediator complex,
L-arabinose metabolic process,
regulation of transcription from RNA polymerase II promoter,
alpha-N-arabinofuranosidase activity,
RNA_polymerase_II_transcription_cofactor_activity
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details
CFinderM001457mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
details
CFinderM001458mRNA_surveillance_pathway
AGC_RSK-2 (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
cell death,
details
CFinderM001468IWS1 Transcription_Regulator(from iTAK)
Biotin_metabolism
Fatty_acid_biosynthesis
details
CFinderM001525MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001546calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
GH17 Glycoside_Hydrolases
CBM43 Carbohydrate-Binding_Modules
MYB-related Transcription_Regulator(from iTAK)
endoplasmic reticulum,
integral to membrane,
details
CFinderM001570cis-Golgi network,
transcription factor TFIID complex,
Basal_transcription_factors
details
CFinderM001574SBP Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001579mediator complex,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
RNA_polymerase_II_transcription_cofactor_activity
vesicle-mediated transport,
nucleotidyltransferase activity,
details
CFinderM001586mediator complex,
regulation of transcription from RNA polymerase II promoter,
transcription, DNA-dependent,
ribonucleoside_binding
RNA_polymerase_II_transcription_cofactor_activity
RNA_polymerase
details
CFinderM001729mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
transferase activity, transferring acyl groups,
details
CFinderM001785transferase activity, transferring pentosyl groups,
Nicotinate_and_nicotinamide_metabolism
Diterpenoid_biosynthesis
details
CFinderM001786lipid metabolic process,
details
CFinderM001820mediator complex,
CBM43 Carbohydrate-Binding_Modules
GH17 Glycoside_Hydrolases
details
CFinderM001837Ribosome
ribosome biogenesis,
ribonucleoprotein complex,
large ribosomal subunit,
details
CFinderM001849SNF2 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM001879cis-Golgi network,
details

4.Expression profilings


Show details about module gene expression profiling