|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SNF2 Transcription_Regulator(from iTAK) | 0.012187768 | GFam | | mediator complex, | 0.015718037 | GO:0016592 | | regulation of transcription from RNA polymerase II promoter, | 0.047953863 | GO:0006357 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000155G1180 | nucleic acid binding | AT1G27750 (3.90E-82) | | PH01000207G1290 | GDSL-like Lipase/Acylhydrolase superfamily protein | AT1G56670 (7.40E-66) | | PH01000503G0700 | RNA polymerase II transcription mediators | AT1G55325 (0.00E+00) | | PH01000668G0460 | histone mono-ubiquitination 1 | AT2G44950 (2.00E-171) | | PH01001067G0360 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | AT1G50410 (0.00E+00) | | PH01001650G0140 | Protein of unknown function (DUF1195) | AT5G65650 (5.20E-27) | | PH01003708G0150 | AAA-type ATPase family protein | AT1G02890 (0.00E+00) | | PH01004547G0060 | IAP-like protein 1 | AT1G17210 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000068 | cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
| details | | CFinderM000545 | binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
| details | | CFinderM000590 | Ribosome
translation,
structural constituent of ribosome,
SNF2 Transcription_Regulator(from iTAK)
intracellular,
RNA_degradation
| details | | CFinderM000732 | SNF2 Transcription_Regulator(from iTAK)
transferase activity, transferring pentosyl groups,
mRNA_surveillance_pathway
| details | | CFinderM001147 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
| details | | CFinderM001202 | mediator complex,
L-arabinose metabolic process,
regulation of transcription from RNA polymerase II promoter,
alpha-N-arabinofuranosidase activity,
RNA_polymerase_II_transcription_cofactor_activity
| details | | CFinderM001317 | Ether_lipid_metabolism
Endocytosis
Glycerophospholipid_metabolism
| details | | CFinderM001457 | mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
| details | | CFinderM001525 | MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001546 | calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
GH17 Glycoside_Hydrolases
CBM43 Carbohydrate-Binding_Modules
MYB-related Transcription_Regulator(from iTAK)
endoplasmic reticulum,
integral to membrane,
| details | | CFinderM001570 | cis-Golgi network,
transcription factor TFIID complex,
Basal_transcription_factors
| details | | CFinderM001579 | mediator complex,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
RNA_polymerase_II_transcription_cofactor_activity
vesicle-mediated transport,
nucleotidyltransferase activity,
| details | | CFinderM001586 | mediator complex,
regulation of transcription from RNA polymerase II promoter,
transcription, DNA-dependent,
ribonucleoside_binding
RNA_polymerase_II_transcription_cofactor_activity
RNA_polymerase
| details | | CFinderM001729 | mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
transferase activity, transferring acyl groups,
| details | | CFinderM001785 | transferase activity, transferring pentosyl groups,
Nicotinate_and_nicotinamide_metabolism
Diterpenoid_biosynthesis
| details | | CFinderM001786 | lipid metabolic process,
| details | | CFinderM001819 | SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
| details | | CFinderM001820 | mediator complex,
CBM43 Carbohydrate-Binding_Modules
GH17 Glycoside_Hydrolases
| details | | CFinderM001879 | cis-Golgi network,
| details |
4.Expression profilings |
