PH01000155G1180's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, expressed
Blast result AT1G27750 : 3.90E-82
Blast annotation: nucleic acid binding
2.Location
Scaffold: PH01000155
Strand: +
| Region | Start | End |
| gene | 737302 | 751487 |
| mRNA | 737302 | 751487 |
| exon | 737302 | 738734 |
| exon | 740591 | 741336 |
| exon | 742280 | 743652 |
| exon | 745080 | 745141 |
| exon | 745229 | 745868 |
| exon | 745956 | 746037 |
| exon | 747128 | 747175 |
| exon | 750698 | 750793 |
| exon | 750909 | 751487 |
| CDS | 738383 | 738734 |
| CDS | 740591 | 741336 |
| CDS | 742280 | 743652 |
| CDS | 745080 | 745141 |
| CDS | 745229 | 745868 |
| CDS | 745956 | 746037 |
| CDS | 747128 | 747175 |
| CDS | 750698 | 750793 |
| CDS | 750909 | 751208 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001570 | cis-Golgi network, transcription factor TFIID complex, Basal_transcription_factors |
| coexpression network | CFinderM001786 | lipid metabolic process, |
| coexpression network | CFinderM001819 | SNF2 Transcription_Regulator(from iTAK) cis-Golgi network, mRNA_surveillance_pathway |
| coexpression network | CFinderM001849 | SNF2 Transcription_Regulator(from iTAK) mediator complex, regulation of transcription from RNA polymerase II promoter, |
| coexpression network | CFinderM001879 | cis-Golgi network, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 559 | 617 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.