PH01004547G0060's details annotation
1.Annotation
ICBR annotation: zinc ion binding protein, putative, expressed
Blast result AT1G17210 : 0.00E+00
Blast annotation: IAP-like protein 1
2.Location
Scaffold: PH01004547
Strand: +
| Region | Start | End |
| gene | 42468 | 48877 |
| mRNA | 42468 | 48877 |
| exon | 42468 | 44021 |
| exon | 44685 | 45028 |
| exon | 45137 | 46820 |
| exon | 47431 | 47681 |
| exon | 47837 | 48877 |
| CDS | 43946 | 44021 |
| CDS | 44685 | 45028 |
| CDS | 45137 | 46820 |
| CDS | 47431 | 47681 |
| CDS | 47837 | 47887 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001525 | MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001819 | SNF2 Transcription_Regulator(from iTAK) cis-Golgi network, mRNA_surveillance_pathway |
| coexpression network | CFinderM001849 | SNF2 Transcription_Regulator(from iTAK) mediator complex, regulation of transcription from RNA polymerase II promoter, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07967.12 | zf-C3HC | 2 | 80 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.