CFinderM001147's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)0.007305647GFam
Alfin-like Transcription_Regulator(from iTAK)0.010328349GFam
nucleotidyltransferase activity,0.010636624GO:0016779
TORC1_complex0.011163499GO:0031931
mediator complex,0.023373148GO:0016592
phospholipid metabolic process,0.02972503GO:0006644
TOR_signaling0.02972503GO:0031929
phospholipase A2 activity,0.033571272GO:0004623
lipid catabolic process,0.044504041GO:0016042
methylation,0.044504041GO:0032259
Linoleic_acid_metabolism0.044546294KEGG
Arachidonic_acid_metabolism0.044546294KEGG
Ether_lipid_metabolism0.044546294KEGG
alpha-Linolenic_acid_metabolism0.044546294KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000010G2470Methyltransferase MT-A70 family proteinAT4G09980 (4.00E-174)
PH01000016G0560zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinAT3G27700 (7.00E-119)
PH01000027G0820nucleotidyltransferasesAT3G61690 (0.00E+00)
PH01000142G0800Phospholipase A2 family proteinAT2G06925 (1.80E-41)
PH01000433G0520HEAT repeat ;WD domain, G-beta repeat protein proteinAT3G08850 (0.00E+00)
PH01000503G0700RNA polymerase II transcription mediatorsAT1G55325 (0.00E+00)
PH01001490G0300acyl carrier protein 2AT1G54580 (8.60E-29)
PH01001762G0040alfin-like 1AT5G05610 (7.60E-86)
PH01002033G0150LSD1-like 3AT4G16310 (0.00E+00)
PH01002069G0230cyclophilin 59AT1G53720 (6.00E-122)
PH01002509G0060PAP/OAS1 substrate-binding domain superfamilyAT3G51620 (8.00E-114)
PH01003703G0180DNA-binding bromodomain-containing proteinAT1G58025 (1.20E-52)
PH01004867G0080ubiquitin-protein ligase 1AT1G55860 (0)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000007methylation,
nucleobase-containing compound metabolic process,
details
CFinderM000041Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
details
CFinderM000067GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,
details
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,
details
CFinderM000134mediator complex,
methylation,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM000142ZF-HD Transcription_Regulator(from PlantTFDB)
methylation,
nucleobase-containing compound metabolic process,
ubiquitin-dependent protein catabolic process,
details
CFinderM000284cellular protein modification process,
Ubiquitin_mediated_proteolysis
intracellular,
ubiquitin-protein ligase activity,
binding,
details
CFinderM000343details
CFinderM000344signal peptidase complex,
Protein_export
methylation,
signal peptide processing,
nucleobase-containing compound metabolic process,
details
CFinderM000353intracellular,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Ribosome
ubiquitin-protein ligase activity,
Ribosome
translation,
methylation,
translational initiation,
nucleobase-containing compound metabolic process,
RNA_polymerase
structural constituent of ribosome,
transcription, DNA-dependent,
details
CFinderM000393protein_prenylation
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
protein prenyltransferase activity,
RNA_degradation
ubiquitin-dependent protein catabolic process,
details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000769cellular protein modification process,
Ubiquitin_mediated_proteolysis
ubiquitin-protein ligase activity,
intracellular,
binding,
carbon-sulfur lyase activity,
details
CFinderM000834Ubiquitin_mediated_proteolysis
details
CFinderM000838Ribosome
translation,
structural constituent of ribosome,
methylation,
large ribosomal subunit,
intracellular,
nucleobase-containing compound metabolic process,
details
CFinderM000912intracellular,
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Ribosome
translation,
cellular protein modification process,
structural constituent of ribosome,
Ubiquitin_mediated_proteolysis
details
CFinderM000946SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
actin cytoskeleton organization,
transcription initiation, DNA-dependent,
mitochondrial respiratory chain,
sister_chromatid_cohesion
chromosome condensation,
CMGC_MAPK (from iTAK)
actin binding,
chromosome organization,
ribulose-phosphate 3-epimerase activity,
details
CFinderM001202mediator complex,
L-arabinose metabolic process,
regulation of transcription from RNA polymerase II promoter,
alpha-N-arabinofuranosidase activity,
RNA_polymerase_II_transcription_cofactor_activity
details
CFinderM001221cellular protein modification process,
phospholipid metabolic process,
Alfin-like Transcription_Regulator(from iTAK)
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
lipid catabolic process,
phospholipase A2 activity,
zinc ion binding,
intracellular,
protein binding,
binding,
Arachidonic_acid_metabolism
Linoleic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
Glycerophospholipid_metabolism
details
CFinderM001579mediator complex,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
RNA_polymerase_II_transcription_cofactor_activity
vesicle-mediated transport,
nucleotidyltransferase activity,
details
CFinderM001586mediator complex,
regulation of transcription from RNA polymerase II promoter,
transcription, DNA-dependent,
ribonucleoside_binding
RNA_polymerase_II_transcription_cofactor_activity
RNA_polymerase
details
CFinderM001820mediator complex,
CBM43 Carbohydrate-Binding_Modules
GH17 Glycoside_Hydrolases
details
CFinderM001849SNF2 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
details

4.Expression profilings


Show details about module gene expression profiling