|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | intracellular, | 4.93E-05 | GO:0005622 | | cellular protein modification process, | 0.000468617 | GO:0006464 | | Ubiquitin_mediated_proteolysis | 0.005540631 | KEGG | | Ribosome | 0.007139652 | KEGG | | ubiquitin-protein ligase activity, | 0.008376029 | GO:0004842 | | Ribosome | 0.013371819 | KEGG | | translation, | 0.016060043 | GO:0006412 | | methylation, | 0.016060043 | GO:0032259 | | translational initiation, | 0.028052427 | GO:0006413 | | nucleobase-containing compound metabolic process, | 0.033926223 | GO:0006139 | | RNA_polymerase | 0.041662267 | KEGG | | structural constituent of ribosome, | 0.04840316 | GO:0003735 | | transcription, DNA-dependent, | 0.048896649 | GO:0006351 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000007 | methylation,
nucleobase-containing compound metabolic process,
| details | | CFinderM000041 | Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
| details | | CFinderM000067 | GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,
| details | | CFinderM000068 | cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
| details | | CFinderM000074 | Ribosome
translation,
structural constituent of ribosome,
intracellular,
| details | | CFinderM000107 | diaminopimelate epimerase activity,
pyrroline-5-carboxylate reductase activity,
translation,
proline biosynthetic process,
lysine biosynthetic process via diaminopimelate,
eukaryotic translation elongation factor 1 complex,
translational elongation,
cellular protein modification process,
Lysine_biosynthesis
intracellular,
translation elongation factor activity,
| details | | CFinderM000134 | mediator complex,
methylation,
regulation of transcription from RNA polymerase II promoter,
| details | | CFinderM000142 | ZF-HD Transcription_Regulator(from PlantTFDB)
methylation,
nucleobase-containing compound metabolic process,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM000146 | cellular protein modification process,
intracellular,
Ubiquitin_mediated_proteolysis
| details | | CFinderM000284 | cellular protein modification process,
Ubiquitin_mediated_proteolysis
intracellular,
ubiquitin-protein ligase activity,
binding,
| details | | CFinderM000344 | signal peptidase complex,
Protein_export
methylation,
signal peptide processing,
nucleobase-containing compound metabolic process,
| details | | CFinderM000352 | Ribosome
translation,
Ribosome
intracellular,
structural constituent of ribosome,
translational initiation,
transcription, DNA-dependent,
RNA_polymerase
| details | | CFinderM000545 | binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
| details | | CFinderM000687 | Ubiquitin_mediated_proteolysis
GH35 Glycoside_Hydrolases
cullin-RING ubiquitin ligase complex,
Nucleotide_excision_repair
metallocarboxypeptidase activity,
| details | | CFinderM000769 | cellular protein modification process,
Ubiquitin_mediated_proteolysis
ubiquitin-protein ligase activity,
intracellular,
binding,
carbon-sulfur lyase activity,
| details | | CFinderM000838 | Ribosome
translation,
structural constituent of ribosome,
methylation,
large ribosomal subunit,
intracellular,
nucleobase-containing compound metabolic process,
| details | | CFinderM000911 | intracellular,
Ribosome
translation,
PHD Transcription_Regulator(from iTAK)
structural constituent of ribosome,
protein import into nucleus,
| details | | CFinderM000912 | intracellular,
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Ribosome
translation,
cellular protein modification process,
structural constituent of ribosome,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001147 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
| details | | CFinderM001221 | cellular protein modification process,
phospholipid metabolic process,
Alfin-like Transcription_Regulator(from iTAK)
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
lipid catabolic process,
phospholipase A2 activity,
zinc ion binding,
intracellular,
protein binding,
binding,
Arachidonic_acid_metabolism
Linoleic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
Glycerophospholipid_metabolism
| details |
4.Expression profilings |
