PH01000054G0960's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L36-2, putative, expressed
Blast result AT3G53740 : 1.80E-43
Blast annotation: Ribosomal protein L36e family protein
2.Location
Scaffold: PH01000054
Strand: +
| Region | Start | End |
| gene | 577480 | 581503 |
| mRNA | 577480 | 581503 |
| exon | 577480 | 577812 |
| exon | 579149 | 579348 |
| exon | 580227 | 580253 |
| exon | 580459 | 580602 |
| exon | 580892 | 581503 |
| CDS | 577711 | 577812 |
| CDS | 579149 | 579348 |
| CDS | 580227 | 580253 |
| CDS | 580459 | 580602 |
| CDS | 580892 | 580958 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000068 | cellular protein modification process, ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis binding, intracellular, protein binding, CE8 Carbohydrate_Esterases GH28 Glycoside_Hydrolases Alfin-like Transcription_Regulator(from iTAK) SWI/SNF-SWI3 Transcription_Regulator(from iTAK) TORC1_complex |
| coexpression network | CFinderM000352 | Ribosome translation, Ribosome intracellular, structural constituent of ribosome, translational initiation, transcription, DNA-dependent, RNA_polymerase |
| coexpression network | CFinderM000353 | intracellular, cellular protein modification process, Ubiquitin_mediated_proteolysis Ribosome ubiquitin-protein ligase activity, Ribosome translation, methylation, translational initiation, nucleobase-containing compound metabolic process, RNA_polymerase structural constituent of ribosome, transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01158.17 | Ribosomal_L36e | 8 | 101 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L36e | ko03011 | K02920 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.