PH01000016G0560's details annotation
1.Annotation
ICBR annotation: RNA-binding motif protein, putative, expressed
Blast result AT3G27700 : 7.00E-119
Blast annotation: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
2.Location
Scaffold: PH01000016
Strand: -
| Region | Start | End |
| gene | 429150 | 433365 |
| mRNA | 429150 | 433365 |
| exon | 429150 | 429274 |
| exon | 429450 | 429770 |
| exon | 429952 | 431109 |
| exon | 431626 | 433365 |
| CDS | 429251 | 429274 |
| CDS | 429450 | 429770 |
| CDS | 429952 | 431109 |
| CDS | 431626 | 432429 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000068 | cellular protein modification process, ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis binding, intracellular, protein binding, CE8 Carbohydrate_Esterases GH28 Glycoside_Hydrolases Alfin-like Transcription_Regulator(from iTAK) SWI/SNF-SWI3 Transcription_Regulator(from iTAK) TORC1_complex |
| coexpression network | CFinderM001147 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Alfin-like Transcription_Regulator(from iTAK) nucleotidyltransferase activity, TORC1_complex mediator complex, phospholipid metabolic process, TOR_signaling phospholipase A2 activity, lipid catabolic process, methylation, Linoleic_acid_metabolism Arachidonic_acid_metabolism Ether_lipid_metabolism alpha-Linolenic_acid_metabolism |
| coexpression network | CFinderM001221 | cellular protein modification process, phospholipid metabolic process, Alfin-like Transcription_Regulator(from iTAK) ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis lipid catabolic process, phospholipase A2 activity, zinc ion binding, intracellular, protein binding, binding, Arachidonic_acid_metabolism Linoleic_acid_metabolism Ether_lipid_metabolism alpha-Linolenic_acid_metabolism Glycerophospholipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 471 | 533 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.