PH01001490G0300's details annotation
1.Annotation
ICBR annotation: acyl carrier protein, putative, expressed
Blast result AT1G54580 : 8.60E-29
Blast annotation: acyl carrier protein 2
2.Location
Scaffold: PH01001490
Strand: +
| Region | Start | End |
| gene | 226336 | 229876 |
| mRNA | 226336 | 229876 |
| exon | 226336 | 226493 |
| exon | 227445 | 227543 |
| exon | 228354 | 228476 |
| exon | 229027 | 229876 |
| CDS | 226446 | 226493 |
| CDS | 227445 | 227543 |
| CDS | 228354 | 228476 |
| CDS | 229027 | 229155 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000343 | |
| coexpression network | CFinderM001147 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Alfin-like Transcription_Regulator(from iTAK) nucleotidyltransferase activity, TORC1_complex mediator complex, phospholipid metabolic process, TOR_signaling phospholipase A2 activity, lipid catabolic process, methylation, Linoleic_acid_metabolism Arachidonic_acid_metabolism Ether_lipid_metabolism alpha-Linolenic_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00550.24 | PP-binding | 56 | 123 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006633 | fatty acid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.