PH01000027G0820's details annotation
1.Annotation
ICBR annotation: nucleotidyltransferase, putative, expressed
Blast result AT3G61690 : 0.00E+00
Blast annotation: nucleotidyltransferases
2.Location
Scaffold: PH01000027
Strand: -
| Region | Start | End |
| gene | 557267 | 569957 |
| mRNA | 557267 | 569957 |
| exon | 557267 | 558273 |
| exon | 559579 | 559776 |
| exon | 559834 | 561965 |
| exon | 562719 | 562907 |
| exon | 562995 | 563097 |
| exon | 563174 | 563356 |
| exon | 563547 | 563639 |
| exon | 565601 | 565789 |
| exon | 566214 | 566840 |
| exon | 568507 | 569957 |
| CDS | 557653 | 558273 |
| CDS | 559579 | 559776 |
| CDS | 559834 | 561965 |
| CDS | 562719 | 562907 |
| CDS | 562995 | 563097 |
| CDS | 563174 | 563356 |
| CDS | 563547 | 563639 |
| CDS | 565601 | 565789 |
| CDS | 566214 | 566840 |
| CDS | 568507 | 568701 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000393 | protein_prenylation SNF2 Transcription_Regulator(from iTAK) helicase activity, protein prenyltransferase activity, RNA_degradation ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000545 | binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding, |
| coexpression network | CFinderM001147 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Alfin-like Transcription_Regulator(from iTAK) nucleotidyltransferase activity, TORC1_complex mediator complex, phospholipid metabolic process, TOR_signaling phospholipase A2 activity, lipid catabolic process, methylation, Linoleic_acid_metabolism Arachidonic_acid_metabolism Ether_lipid_metabolism alpha-Linolenic_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01909.22 | NTP_transf_2 | 272 | 341 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.