CFinderM000393's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein_prenylation0.00337442GO:0018342
SNF2 Transcription_Regulator(from iTAK)0.009155108GFam
helicase activity,0.011736923GO:0004386
protein prenyltransferase activity,0.016472614GO:0008318
RNA_degradation0.020270217KEGG
ubiquitin-dependent protein catabolic process,0.037857009GO:0006511

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000001G2110RNAhelicase-like 8AT4G00660 (0.00E+00)
PH01000027G0820nucleotidyltransferasesAT3G61690 (0.00E+00)
PH01000483G0330RAB geranylgeranyl transferase alpha subunit 1AT4G24490 (4.00E-132)
PH01001540G0210SNF2 domain-containing protein / helicase domain-containing proteinAT3G12810 (0.00E+00)
PH01002610G0060ubiquitin-specific protease 10AT4G10590 (0.00E+00)
PH01003138G0110RNA-binding KH domain-containing proteinAT5G46190 (6.00E-142)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000891cellular protein modification process,
Ubiquitin_mediated_proteolysis
binding,
ubiquitin-protein ligase activity,
SNF2 Transcription_Regulator(from iTAK)
RNA metabolic process,
intracellular,
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details

4.Expression profilings