Annotation of co-expression genes

PH01000142G0800's details annotation

1.Annotation

ICBR annotation: phospholipase A2, putative, expressed

Blast result AT2G06925 : 1.80E-41
Blast annotation: Phospholipase A2 family protein

2.Location

Scaffold: PH01000142
Strand: -

RegionStartEnd
gene489860492018
mRNA489860492018
exon489860491310
exon491702491726
exon491848492018
CDS491138491310
CDS491702491726
CDS491848491985

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
coexpression networkCFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
coexpression networkCFinderM001221cellular protein modification process,
phospholipid metabolic process,
Alfin-like Transcription_Regulator(from iTAK)
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
lipid catabolic process,
phospholipase A2 activity,
zinc ion binding,
intracellular,
protein binding,
binding,
Arachidonic_acid_metabolism
Linoleic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
Glycerophospholipid_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismsecretory phospholipase A2 [EC:3.1.1.4]ko00564K01047
Ether lipid metabolismsecretory phospholipase A2 [EC:3.1.1.4]ko00565K01047
Arachidonic acid metabolismsecretory phospholipase A2 [EC:3.1.1.4]ko00590K01047
Linoleic acid metabolismsecretory phospholipase A2 [EC:3.1.1.4]ko00591K01047
alpha-Linolenic acid metabolismsecretory phospholipase A2 [EC:3.1.1.4]ko00592K01047

10.Gene Ontology

GO AccessionGO Annotation
GO:0004623phospholipase A2 activity
GO:0006644phospholipid metabolic process
GO:0016042lipid catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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