PH01000394G0450's details annotation
1.Annotation
ICBR annotation: cig3, putative, expressed
Blast result AT5G19400 : 4.00E-176
Blast annotation: Telomerase activating protein Est1
2.Location
Scaffold: PH01000394
Strand: +
| Region | Start | End |
| gene | 409481 | 417729 |
| mRNA | 409481 | 417729 |
| exon | 409481 | 410958 |
| exon | 411870 | 411875 |
| exon | 412205 | 412804 |
| exon | 412909 | 413031 |
| exon | 414262 | 414491 |
| exon | 414572 | 417729 |
| CDS | 410887 | 410958 |
| CDS | 411870 | 411875 |
| CDS | 412205 | 412804 |
| CDS | 412909 | 413031 |
| CDS | 414262 | 414491 |
| CDS | 414572 | 416642 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000729 | positive_regulation_of_transcription,_DNA-templated GATA Transcription_Regulator(from PlantTFDB) C2C2-GATA Transcription_Regulator(from iTAK) TKL_CTR1-DRK-2 (from iTAK) mRNA_surveillance_pathway |
| coexpression network | CFinderM000732 | SNF2 Transcription_Regulator(from iTAK) transferase activity, transferring pentosyl groups, mRNA_surveillance_pathway |
| coexpression network | CFinderM000977 | mRNA_surveillance_pathway CAMTA Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis defense response, |
| coexpression network | CFinderM001457 | mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity |
| coexpression network | CFinderM001458 | mRNA_surveillance_pathway AGC_RSK-2 (from iTAK) SBP Transcription_Regulator(from PlantTFDB) cell death, |
| coexpression network | CFinderM001525 | MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001729 | mRNA_surveillance_pathway CAMTA Transcription_Regulator(from PlantTFDB) protein binding, transferase activity, transferring acyl groups, |
| coexpression network | CFinderM001785 | transferase activity, transferring pentosyl groups, Nicotinate_and_nicotinamide_metabolism Diterpenoid_biosynthesis |
| coexpression network | CFinderM001819 | SNF2 Transcription_Regulator(from iTAK) cis-Golgi network, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10374.8 | EST1 | 72 | 192 |
| PF10373.8 | EST1_DNA_bind | 206 | 540 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein SMG7 | ko03015 | K14409 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.