PH01002064G0120's details annotation
1.Annotation
ICBR annotation: EMB2423, putative
Blast result AT3G48470 : 9.00E-174
Blast annotation: embryo defective 2423
2.Location
Scaffold: PH01002064
Strand: -
| Region | Start | End |
| gene | 67488 | 75129 |
| mRNA | 67488 | 75129 |
| exon | 67488 | 69318 |
| exon | 69795 | 69993 |
| exon | 70084 | 70841 |
| exon | 70924 | 71429 |
| exon | 71525 | 71660 |
| exon | 72890 | 73092 |
| exon | 73669 | 73837 |
| exon | 73989 | 74006 |
| exon | 74713 | 75129 |
| CDS | 69172 | 69318 |
| CDS | 69795 | 69993 |
| CDS | 70084 | 70841 |
| CDS | 70924 | 71429 |
| CDS | 71525 | 71660 |
| CDS | 72890 | 73092 |
| CDS | 73669 | 73837 |
| CDS | 73989 | 74006 |
| CDS | 74713 | 74769 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001202 | mediator complex, L-arabinose metabolic process, regulation of transcription from RNA polymerase II promoter, alpha-N-arabinofuranosidase activity, RNA_polymerase_II_transcription_cofactor_activity |
| coexpression network | CFinderM001525 | MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001579 | mediator complex, vesicle docking involved in exocytosis, regulation of transcription from RNA polymerase II promoter, RNA_polymerase_II_transcription_cofactor_activity vesicle-mediated transport, nucleotidyltransferase activity, |
| coexpression network | CFinderM001586 | mediator complex, regulation of transcription from RNA polymerase II promoter, transcription, DNA-dependent, ribonucleoside_binding RNA_polymerase_II_transcription_cofactor_activity RNA_polymerase |
| coexpression network | CFinderM001819 | SNF2 Transcription_Regulator(from iTAK) cis-Golgi network, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10193.8 | Telomere_reg-2 | 348 | 458 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.