Gene details

Annotation of co-expression genes

PH01003261G0020's details annotation

1.Annotation

ICBR annotation: armadillo/beta-catenin repeat family protein, putative, expressed

Blast result AT2G23140 : 0.00E+00
Blast annotation: RING/U-box superfamily protein with ARM repeat domain

2.Location

Scaffold: PH01003261
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001322	ubiquitin ligase complex, protein ubiquitination, DNA_replication protein binding,
coexpression network	CFinderM001445	Nucleotide_excision_repair nucleotide-excision repair, endonuclease activity, nuclease activity, single-stranded DNA binding, protein binding, DNA repair, protein ubiquitination,
coexpression network	CFinderM001602	SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway transcription initiation, DNA-dependent,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0000151	ubiquitin ligase complex
GO:0004842	ubiquitin-protein ligase activity
GO:0005488	binding
GO:0005515	protein binding
GO:0016567	protein ubiquitination

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.