PH01000417G0610's details annotation
1.Annotation
ICBR annotation: FAD dependent oxidoreductase domain containing protein, expressed
Blast result AT5G49555 : 0.00E+00
Blast annotation: FAD/NAD(P)-binding oxidoreductase family protein
2.Location
Scaffold: PH01000417
Strand: +
| Region | Start | End |
| gene | 357099 | 368181 |
| mRNA | 357099 | 368181 |
| exon | 357099 | 358949 |
| exon | 359106 | 359267 |
| exon | 359416 | 359598 |
| exon | 359699 | 359756 |
| exon | 359914 | 359964 |
| exon | 360044 | 360126 |
| exon | 360489 | 360576 |
| exon | 360812 | 360856 |
| exon | 360933 | 361007 |
| exon | 361114 | 361182 |
| exon | 361601 | 361716 |
| exon | 362257 | 362369 |
| exon | 362614 | 362693 |
| exon | 362906 | 363026 |
| exon | 363127 | 363193 |
| exon | 363315 | 363388 |
| exon | 364928 | 365023 |
| exon | 365977 | 366032 |
| exon | 366384 | 366492 |
| exon | 367433 | 367599 |
| exon | 367849 | 368181 |
| CDS | 358645 | 358949 |
| CDS | 359106 | 359267 |
| CDS | 359416 | 359598 |
| CDS | 359699 | 359756 |
| CDS | 359914 | 359964 |
| CDS | 360044 | 360126 |
| CDS | 360489 | 360576 |
| CDS | 360812 | 360856 |
| CDS | 360933 | 361007 |
| CDS | 361114 | 361182 |
| CDS | 361601 | 361716 |
| CDS | 362257 | 362369 |
| CDS | 362614 | 362693 |
| CDS | 362906 | 363026 |
| CDS | 363127 | 363193 |
| CDS | 363315 | 363388 |
| CDS | 364928 | 365023 |
| CDS | 365977 | 366032 |
| CDS | 366384 | 366492 |
| CDS | 367433 | 367599 |
| CDS | 367849 | 368124 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000900 | phosphopyruvate hydratase complex, glycolysis, phosphopyruvate hydratase activity, Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-6 (from iTAK) magnesium ion binding, argininosuccinate synthase activity, 6-phosphofructokinase complex, arginine biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01266.23 | DAO | 37 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.