PH01000430G0420's details annotation
1.Annotation
ICBR annotation: DUF630/DUF632 domains containing protein, putative, expressed
Blast result AT2G27090 : 6.00E-150
Blast annotation: Protein of unknown function (DUF630 and DUF632)
2.Location
Scaffold: PH01000430
Strand: -
| Region | Start | End |
| gene | 245082 | 250753 |
| mRNA | 245082 | 250753 |
| exon | 245082 | 246371 |
| exon | 246481 | 246704 |
| exon | 248106 | 248320 |
| exon | 248815 | 248889 |
| exon | 249117 | 250753 |
| CDS | 245723 | 246371 |
| CDS | 246481 | 246704 |
| CDS | 248106 | 248320 |
| CDS | 248815 | 248889 |
| CDS | 249117 | 250338 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001875 | histone deacetylation, histone deacetylase activity, DNA_replication Mismatch_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04783.11 | DUF630 | 1 | 59 |
| PF04782.11 | DUF632 | 367 | 714 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.