PH01000432G0070's details annotation
1.Annotation
ICBR annotation: cyclin-dependent kinase G-2, putative, expressed
Blast result AT1G67580 : 1.00E-123
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000432
Strand: -
| Region | Start | End |
| gene | 45293 | 52720 |
| mRNA | 45293 | 52720 |
| exon | 45293 | 45776 |
| exon | 46948 | 47073 |
| exon | 48295 | 48370 |
| exon | 48483 | 48556 |
| exon | 49443 | 49549 |
| exon | 50097 | 50232 |
| exon | 50284 | 50347 |
| exon | 50439 | 50476 |
| exon | 50572 | 52720 |
| CDS | 45698 | 45776 |
| CDS | 46948 | 47073 |
| CDS | 48295 | 48370 |
| CDS | 48483 | 48556 |
| CDS | 49443 | 49549 |
| CDS | 50097 | 50232 |
| CDS | 50284 | 50347 |
| CDS | 50439 | 50476 |
| CDS | 50572 | 51878 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001199 | proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), CMGC_CDK-PITSLRE (from iTAK) HB-other Transcription_Regulator(from PlantTFDB) C3H Transcription_Regulator(from PlantTFDB) tricarboxylic acid cycle, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Pyruvate_metabolism Carbon_fixation_pathways_in_prokaryotes Methane_metabolism Carbon_fixation_in_photosynthetic_organisms |
| coexpression network | CFinderM001320 | CMGC_CDK-PITSLRE (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 313 | 517 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.