Annotation of co-expression genes

PH01000432G0510's details annotation

1.Annotation

ICBR annotation: glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed

Blast result AT5G40760 : 0.00E+00
Blast annotation: glucose-6-phosphate dehydrogenase 6

2.Location

Scaffold: PH01000432
Strand: -

RegionStartEnd
gene323759332453
mRNA323759332453
exon323759324102
exon324211324256
exon324450324565
exon324735324776
exon325909325979
exon326664326759
exon326901327048
exon327213327284
exon327568327604
exon329173329231
exon329518329586
exon329669329911
exon330214330357
exon330429330477
exon330898330983
exon331375332453
CDS323932324102
CDS324211324256
CDS324450324565
CDS324735324776
CDS325909325979
CDS326664326759
CDS326901327048
CDS327213327284
CDS327568327604
CDS329173329231
CDS329518329586
CDS329669329911
CDS330214330357
CDS330429330477
CDS330898330983
CDS331375331551

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000899glucose-6-phosphate dehydrogenase activity,
glucose metabolic process,
galactosyltransferase activity,
NADP binding,
Glutathione_metabolism
Pentose_phosphate_pathway
Glycine,_serine_and_threonine_metabolism
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate
Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin
protein glycosylation,
phosphoserine phosphatase activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides,
chorismate mutase activity,
chorismate metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00479.21G6PD_N36232
PF02781.15G6PD_C234527

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Pentose phosphate pathwayglucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]ko00030K00036
Glutathione metabolismglucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49]ko00480K00036

10.Gene Ontology

GO AccessionGO Annotation
GO:0004345glucose-6-phosphate dehydrogenase activity
GO:0006006glucose metabolic process
GO:0050661NADP binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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