PH01000432G0630's details annotation
1.Annotation
ICBR annotation: kelch repeat protein, putative, expressed
Blast result AT5G50310 : 0.00E+00
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01000432
Strand: +
| Region | Start | End |
| gene | 434708 | 447700 |
| mRNA | 434708 | 447700 |
| exon | 434708 | 435680 |
| exon | 436176 | 436262 |
| exon | 436786 | 436854 |
| exon | 437112 | 437244 |
| exon | 437344 | 437390 |
| exon | 437832 | 437882 |
| exon | 438490 | 438551 |
| exon | 439776 | 439818 |
| exon | 440515 | 440631 |
| exon | 440801 | 440906 |
| exon | 443038 | 443126 |
| exon | 443438 | 443659 |
| exon | 443754 | 443915 |
| exon | 444081 | 444200 |
| exon | 445719 | 445871 |
| exon | 446054 | 446140 |
| exon | 446246 | 446314 |
| exon | 446395 | 447700 |
| CDS | 435549 | 435680 |
| CDS | 436176 | 436262 |
| CDS | 436786 | 436854 |
| CDS | 437112 | 437244 |
| CDS | 437344 | 437390 |
| CDS | 437832 | 437882 |
| CDS | 438490 | 438551 |
| CDS | 439776 | 439818 |
| CDS | 440515 | 440631 |
| CDS | 440801 | 440906 |
| CDS | 443038 | 443126 |
| CDS | 443438 | 443659 |
| CDS | 443754 | 443915 |
| CDS | 444081 | 444200 |
| CDS | 445719 | 445871 |
| CDS | 446054 | 446140 |
| CDS | 446246 | 446314 |
| CDS | 446395 | 446499 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000852 | ATP-dependent helicase activity, helicase activity, membrane coat, Ribosome_biogenesis_in_eukaryotes |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13418.5 | Kelch_4 | 68 | 123 |
| PF13964.5 | Kelch_6 | 124 | 171 |
| PF13415.5 | Kelch_3 | 208 | 266 |
| PF13422.5 | DUF4110 | 522 | 608 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.