Annotation of co-expression genes

PH01000436G0710's details annotation

1.Annotation

ICBR annotation: ZOS7-13 - C2H2 zinc finger protein, expressed

Blast result AT3G12270 : 2.00E-152
Blast annotation: protein arginine methyltransferase 3

2.Location

Scaffold: PH01000436
Strand: -

RegionStartEnd
gene484760489280
mRNA484760489280
exon484760486125
exon486434486535
exon486676486843
exon486928487188
exon487280487358
exon487870487967
exon488099488599
exon488909489280
CDS485688486125
CDS486434486535
CDS486676486843
CDS486928487188
CDS487280487358
CDS487870487967
CDS488099488599
CDS488909489139

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001282protein methylation,
intracellular,
methyltransferase activity,
nucleotide binding,
nucleic acid binding,
IWS1 Transcription_Regulator(from iTAK)
ribosome biogenesis,
transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12756.6zf-C2H2_228106
PF13649.5Methyltransf_25266381

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006479protein methylation
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.