Annotation of co-expression genes

PH01000437G0360's details annotation

1.Annotation

ICBR annotation: alpha-amylase precursor, putative, expressed

Blast result AT4G25000 : 2.00E-149
Blast annotation: alpha-amylase-like

2.Location

Scaffold: PH01000437
Strand: +

RegionStartEnd
gene282396284249
mRNA282396284249
exon282396282568
exon282686282818
exon282881283752
exon283852284249
CDS282482282568
CDS282686282818
CDS282881283752
CDS283852284103

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00128.23Alpha-amylase53211
PF07821.11Alpha-amyl_C2367425

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismalpha-amylase [EC:3.2.1.1]ko00500K01176

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004556alpha-amylase activity
GO:0005509calcium ion binding
GO:0005975carbohydrate metabolic process
GO:0043169cation binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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