PH01000437G0420's details annotation
1.Annotation
ICBR annotation: xyloglucan fucosyltransferase, putative, expressed
Blast result AT2G03220 : 3.00E-177
Blast annotation: fucosyltransferase 1
2.Location
Scaffold: PH01000437
Strand: -
| Region | Start | End |
| gene | 314490 | 317995 |
| mRNA | 314490 | 317995 |
| exon | 314490 | 316485 |
| exon | 317439 | 317995 |
| CDS | 315050 | 316485 |
| CDS | 317439 | 317706 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000154 | GT37 GlycosylTransferases cell wall biogenesis, cell death, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, integral to membrane, membrane, mRNA_surveillance_pathway |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
| coexpression network | CFinderM001442 | GT37 GlycosylTransferases RLK-Pelle_LRR-Xa (from iTAK) cell wall biogenesis, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, |
| coexpression network | CFinderM001620 | GT37 GlycosylTransferases cell wall biogenesis, purine ribonucleoside monophosphate biosynthetic process, IMP biosynthetic process, AMP deaminase activity, deaminase activity, galactoside 2-alpha-L-fucosyltransferase activity, N-acetyltransferase_activity |
| coexpression network | CFinderM001690 | GT37 GlycosylTransferases cell wall biogenesis, proteolysis, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, mRNA_surveillance_pathway |
| coexpression network | CFinderM001738 | GT37 GlycosylTransferases galactoside 2-alpha-L-fucosyltransferase activity, cell wall biogenesis, cell death, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis membrane coat, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT37 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03254.12 | XG_FTase | 93 | 535 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008107 | galactoside 2-alpha-L-fucosyltransferase activity |
| GO:0016020 | membrane |
| GO:0042546 | cell wall biogenesis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.