PH01000437G0840's details annotation
1.Annotation
ICBR annotation: M16 domain containing zinc peptidase, putative, expressed
Blast result AT3G19170 : 0
Blast annotation: presequence protease 1
2.Location
Scaffold: PH01000437
Strand: -
| Region | Start | End |
| gene | 567872 | 571698 |
| mRNA | 567872 | 571698 |
| exon | 567872 | 568487 |
| exon | 568572 | 568736 |
| exon | 568817 | 569337 |
| exon | 569473 | 569563 |
| exon | 570020 | 570090 |
| exon | 570190 | 570322 |
| exon | 570410 | 570584 |
| exon | 570790 | 570970 |
| exon | 571337 | 571698 |
| CDS | 568155 | 568487 |
| CDS | 568572 | 568736 |
| CDS | 568817 | 569337 |
| CDS | 569473 | 569563 |
| CDS | 570020 | 570090 |
| CDS | 570190 | 570322 |
| CDS | 570410 | 570584 |
| CDS | 570790 | 570970 |
| CDS | 571337 | 571616 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000677 | UMP biosynthetic process, 'de novo' pyrimidine base biosynthetic process, purine ribonucleotide biosynthetic process, histidyl-tRNA aminoacylation, Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity, translation_initiation_factor_binding N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, histidine-tRNA ligase activity, nucleotide-excision repair, proteolysis, ATP-dependent DNA helicase activity, translational initiation, nucleobase-containing compound metabolic process, RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00675.19 | Peptidase_M16 | 154 | 229 |
| PF05193.20 | Peptidase_M16_C | 280 | 460 |
| PF08367.10 | M16C_assoc | 538 | 607 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006508 | proteolysis |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.