PH01000447G0830's details annotation
1.Annotation
ICBR annotation: ethylene-responsive protein related, putative, expressed
Blast result AT1G31050 : 2.20E-33
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
2.Location
Scaffold: PH01000447
Strand: -
| Region | Start | End |
| gene | 565704 | 568051 |
| mRNA | 565704 | 568051 |
| exon | 565704 | 565892 |
| exon | 565983 | 566021 |
| exon | 566459 | 566524 |
| exon | 566633 | 566740 |
| exon | 566800 | 566922 |
| exon | 567039 | 567603 |
| exon | 567706 | 568051 |
| CDS | 565719 | 565892 |
| CDS | 565983 | 566021 |
| CDS | 566459 | 566524 |
| CDS | 566633 | 566740 |
| CDS | 566800 | 566922 |
| CDS | 567039 | 567603 |
| CDS | 567706 | 567905 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.