PH01000448G0700's details annotation
1.Annotation
ICBR annotation: superkiller viralicidic activity 2-like 2, putative, expressed
Blast result AT1G59760 : 7.00E-177
Blast annotation: RNA helicase, ATP-dependent, SK12/DOB1 protein
2.Location
Scaffold: PH01000448
Strand: +
| Region | Start | End |
| gene | 537367 | 542907 |
| mRNA | 537367 | 542907 |
| exon | 537367 | 537673 |
| exon | 538773 | 539049 |
| exon | 539874 | 540019 |
| exon | 540132 | 540281 |
| exon | 540366 | 540598 |
| exon | 541058 | 541322 |
| exon | 541416 | 542907 |
| CDS | 537599 | 537673 |
| CDS | 538773 | 539049 |
| CDS | 539874 | 540019 |
| CDS | 540132 | 540281 |
| CDS | 540366 | 540598 |
| CDS | 541058 | 541322 |
| CDS | 541416 | 541694 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001793 | cysteine desulfurase activity, cysteine metabolic process, 6-phosphofructokinase complex, fructose_6-phosphate_metabolic_process Sulfur_relay_system Thiamine_metabolism 6-phosphofructokinase activity, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, Galactose_metabolism Fructose_and_mannose_metabolism Pentose_phosphate_pathway |
| coexpression network | CFinderM001860 | Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis Protein_processing_in_endoplasmic_reticulum dolichyl-diphosphooligosaccharide-protein glycotransferase activity, GT66 GlycosylTransferases protein glycosylation, protein N-linked glycosylation via asparagine, phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, phenylalanine-tRNA ligase activity, oligosaccharyl transferase activity, tRNA binding, ER_membrane_protein_complex Aminoacyl-tRNA_biosynthesis endoplasmic reticulum membrane, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13234.5 | rRNA_proc-arch | 26 | 272 |
| PF08148.11 | DSHCT | 300 | 469 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.