PH01000450G0080's details annotation
1.Annotation
ICBR annotation: aquaporin protein, putative, expressed
Blast result AT2G16850 : 2.00E-132
Blast annotation: plasma membrane intrinsic protein 2;8
2.Location
Scaffold: PH01000450
Strand: +
| Region | Start | End |
| gene | 84734 | 86182 |
| mRNA | 84734 | 86182 |
| exon | 84734 | 85143 |
| exon | 85241 | 85536 |
| exon | 85628 | 85768 |
| exon | 85866 | 86182 |
| CDS | 84852 | 85143 |
| CDS | 85241 | 85536 |
| CDS | 85628 | 85768 |
| CDS | 85866 | 85985 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001035 | GT14 GlycosylTransferases CAMTA Transcription_Regulator(from PlantTFDB) microtubule, protein complex, RNA_degradation Phagosome |
| coexpression network | CFinderM001126 | negative_regulation_of_transcription,_DNA-templated RNA_degradation |
| coexpression network | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated FMN binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00230.19 | MIP | 30 | 260 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.