Annotation of co-expression genes

PH01000455G0920's details annotation

1.Annotation

ICBR annotation: aspartyl aminopeptidase, putative, expressed

Blast result AT5G60160 : 0.00E+00
Blast annotation: Zn-dependent exopeptidases superfamily protein

2.Location

Scaffold: PH01000455
Strand: -

RegionStartEnd
gene652232660993
mRNA652232660993
exon652232653101
exon654257654397
exon654483654557
exon655473655556
exon656235656390
exon656519656605
exon657249657321
exon658150658178
exon658387658459
exon659355659557
exon659754659832
exon660016660154
exon660255660993
CDS652880653101
CDS654257654397
CDS654483654557
CDS655473655556
CDS656235656390
CDS656519656605
CDS657249657321
CDS658150658178
CDS658387658459
CDS659355659557
CDS659754659832
CDS660016660154
CDS660255660333

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000190pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
proteolysis,
pyridoxamine-phosphate oxidase activity,
methionine adenosyltransferase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
aminopeptidase activity,
serine-type peptidase activity,
FMN binding,
coexpression networkCFinderM000195pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
proteolysis,
pyridoxamine-phosphate oxidase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
methionine adenosyltransferase activity,
Endocytosis
aminopeptidase activity,
coexpression networkCFinderM001090GT14 GlycosylTransferases
proteolysis,
membrane,
aminopeptidase activity,
coexpression networkCFinderM001313spliceosomal complex,
aminopeptidase activity,
ubiquitin thiolesterase activity,
nuclear mRNA splicing, via spliceosome,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02127.14Peptidase_M1815190
PF02127.14Peptidase_M18197335
PF02127.14Peptidase_M18338465

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004177aminopeptidase activity
GO:0006508proteolysis
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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