PH01000457G0010's details annotation
1.Annotation
ICBR annotation: glutamyl-tRNA synthetase, putative, expressed
Blast result AT5G64050 : 0.00E+00
Blast annotation: glutamate tRNA synthetase
2.Location
Scaffold: PH01000457
Strand: -
| Region | Start | End |
| gene | 10532 | 17788 |
| mRNA | 10532 | 17788 |
| exon | 10532 | 11246 |
| exon | 11568 | 11724 |
| exon | 11911 | 12011 |
| exon | 12512 | 12601 |
| exon | 12812 | 12926 |
| exon | 13631 | 13694 |
| exon | 13803 | 13905 |
| exon | 14112 | 14213 |
| exon | 14324 | 14372 |
| exon | 14455 | 14573 |
| exon | 14716 | 14898 |
| exon | 15254 | 15375 |
| exon | 15679 | 17788 |
| CDS | 11016 | 11246 |
| CDS | 11568 | 11724 |
| CDS | 11911 | 12011 |
| CDS | 12512 | 12601 |
| CDS | 12812 | 12926 |
| CDS | 13631 | 13694 |
| CDS | 13803 | 13905 |
| CDS | 14112 | 14213 |
| CDS | 14324 | 14372 |
| CDS | 14455 | 14573 |
| CDS | 14716 | 14898 |
| CDS | 15254 | 15375 |
| CDS | 15679 | 16015 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000837 | glutamyl-tRNA aminoacylation, guanosine tetraphosphate metabolic process, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism glutamate-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA binding, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00749.20 | tRNA-synt_1c | 45 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Porphyrin and chlorophyll metabolism | glutamyl-tRNA synthetase [EC:6.1.1.17] | ko00860 | K01885 |
| Aminoacyl-tRNA biosynthesis | glutamyl-tRNA synthetase [EC:6.1.1.17] | ko00970 | K01885 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000049 | tRNA binding |
| GO:0000166 | nucleotide binding |
| GO:0004812 | aminoacyl-tRNA ligase activity |
| GO:0004818 | glutamate-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006418 | tRNA aminoacylation for protein translation |
| GO:0006424 | glutamyl-tRNA aminoacylation |
| GO:0016876 | ligase activity, forming aminoacyl-tRNA and related compounds |
| GO:0043039 | tRNA aminoacylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.