PH01000462G0330's details annotation
1.Annotation
ICBR annotation: tRNA synthetase, putative, expressed
Blast result AT2G33840 : 2.00E-120
Blast annotation: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
2.Location
Scaffold: PH01000462
Strand: -
| Region | Start | End |
| gene | 221046 | 225811 |
| mRNA | 221046 | 225811 |
| exon | 221046 | 221702 |
| exon | 222227 | 222286 |
| exon | 222701 | 222806 |
| exon | 222976 | 223121 |
| exon | 224111 | 224146 |
| exon | 224333 | 224429 |
| exon | 224564 | 224847 |
| exon | 225336 | 225811 |
| CDS | 221682 | 221702 |
| CDS | 222227 | 222286 |
| CDS | 222701 | 222806 |
| CDS | 222976 | 223121 |
| CDS | 224111 | 224146 |
| CDS | 224333 | 224429 |
| CDS | 224564 | 224847 |
| CDS | 225336 | 225572 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001622 | Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, aminoacyl-tRNA ligase activity, cytoplasm, threonyl-tRNA aminoacylation, ATP binding, tyrosine-tRNA ligase activity, threonine-tRNA ligase activity, tRNA aminoacylation, protein catabolic process, ATP-dependent peptidase activity, ligase activity, forming aminoacyl-tRNA and related compounds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00579.24 | tRNA-synt_1b | 64 | 218 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Aminoacyl-tRNA biosynthesis | tyrosyl-tRNA synthetase [EC:6.1.1.1] | ko00970 | K01866 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0004812 | aminoacyl-tRNA ligase activity |
| GO:0004831 | tyrosine-tRNA ligase activity |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0006418 | tRNA aminoacylation for protein translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.