Annotation of co-expression genes

PH01000464G0140's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family domain containing protein, expressed

Blast result AT3G53520 : 1.10E-77
Blast annotation: UDP-glucuronic acid decarboxylase 1

2.Location

Scaffold: PH01000464
Strand: -

RegionStartEnd
gene6037462526
mRNA6037462526
exon6037460693
exon6076760859
exon6147161545
exon6165061733
exon6222662526
CDS6050560693
CDS6076760859
CDS6147161545
CDS6165061733
CDS6222662255

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001027RLK-Pelle_SD-2b (from iTAK)
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16363.4GDP_Man_Dehyd2143

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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