PH01000466G1030's details annotation
1.Annotation
ICBR annotation: Ser/Thr protein phosphatase family protein, putative, expressed
Blast result AT2G39840 : 3.00E-154
Blast annotation: type one serine/threonine protein phosphatase 4
2.Location
Scaffold: PH01000466
Strand: -
| Region | Start | End |
| gene | 666648 | 669718 |
| mRNA | 666648 | 669718 |
| exon | 666648 | 667003 |
| exon | 667092 | 667651 |
| exon | 668791 | 669718 |
| CDS | 666737 | 667003 |
| CDS | 667092 | 667651 |
| CDS | 668791 | 668974 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000154 | GT37 GlycosylTransferases cell wall biogenesis, cell death, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, integral to membrane, membrane, mRNA_surveillance_pathway |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
| coexpression network | CFinderM001137 | RLK-Pelle_LRR-Xa (from iTAK) coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, Porphyrin_and_chlorophyll_metabolism Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, mRNA_surveillance_pathway |
| coexpression network | CFinderM001620 | GT37 GlycosylTransferases cell wall biogenesis, purine ribonucleoside monophosphate biosynthetic process, IMP biosynthetic process, AMP deaminase activity, deaminase activity, galactoside 2-alpha-L-fucosyltransferase activity, N-acetyltransferase_activity |
| coexpression network | CFinderM001690 | GT37 GlycosylTransferases cell wall biogenesis, proteolysis, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, mRNA_surveillance_pathway |
| coexpression network | CFinderM001738 | GT37 GlycosylTransferases galactoside 2-alpha-L-fucosyltransferase activity, cell wall biogenesis, cell death, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis membrane coat, mRNA_surveillance_pathway |
| coexpression network | CFinderM001859 | protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16891.4 | STPPase_N | 8 | 55 |
| PF00149.27 | Metallophos | 57 | 248 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 1, catalytic subunit [EC:3.1.3.16] | ko03015 | K06269 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.