Annotation of co-expression genes

PH01000467G0350's details annotation

1.Annotation

ICBR annotation: DNA mismatch repair protein, putative, expressed

Blast result AT3G24320 : 0.00E+00
Blast annotation: MUTL protein homolog 1

2.Location

Scaffold: PH01000467
Strand: -

RegionStartEnd
gene276371283781
mRNA276371283781
exon276371277036
exon277088277792
exon277956277981
exon278592278733
exon278884278908
exon280050280193
exon280554280810
exon281156281362
exon281643281816
exon282787282836
exon283307283781
CDS276770277036
CDS277088277792
CDS277956277981
CDS278592278733
CDS278884278908
CDS280050280193
CDS280554280810
CDS281156281362
CDS281643281816
CDS282787282836
CDS283307283640

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001229Phenylalanine,_tyrosine_and_tryptophan_biosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00488.20MutS_V454574

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0006298mismatch repair
GO:0030983mismatched DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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