PH01000494G0590's details annotation
1.Annotation
ICBR annotation: DUF538 domain containing protein, putative, expressed
Blast result AT5G46230 : 6.90E-32
Blast annotation: Protein of unknown function, DUF538
2.Location
Scaffold: PH01000494
Strand: -
| Region | Start | End |
| gene | 395174 | 395878 |
| mRNA | 395174 | 395878 |
| exon | 395174 | 395878 |
| CDS | 395308 | 395802 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000027 | Butanoate_metabolism Citrate_cycle_(TCA_cycle) Pyruvate_metabolism Glycolysis_/_Gluconeogenesis intracellular membrane-bounded organelle, pyruvate dehydrogenase (acetyl-transferring) activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, vesicle docking involved in exocytosis, Endocytosis |
| coexpression network | CFinderM000035 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001023 | vesicle docking involved in exocytosis, vesicle-mediated transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04398.11 | DUF538 | 27 | 140 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.