PH01000496G0400's details annotation
1.Annotation
ICBR annotation: ergosterol biosynthetic protein 28, putative, expressed
Blast result AT1G10030 : 1.50E-50
Blast annotation: homolog of yeast ergosterol28
2.Location
Scaffold: PH01000496
Strand: -
| Region | Start | End |
| gene | 278562 | 281559 |
| mRNA | 278562 | 281559 |
| exon | 278562 | 278852 |
| exon | 279429 | 279635 |
| exon | 280951 | 281559 |
| CDS | 278773 | 278852 |
| CDS | 279429 | 279635 |
| CDS | 280951 | 281092 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000833 | 7-methylguanosine mRNA capping, mRNA processing, mRNA guanylyltransferase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03694.12 | Erg28 | 13 | 108 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.