Annotation of co-expression genes

PH01000500G0260's details annotation

1.Annotation

ICBR annotation: leucine-rich repeat family protein, putative, expressed

Blast result AT4G20940 : 0.00E+00
Blast annotation: Leucine-rich receptor-like protein kinase family protein

2.Location

Scaffold: PH01000500
Strand: +

RegionStartEnd
gene153600158379
mRNA153600158379
exon153600154886
exon156206158379
CDS153821154886
CDS156206157770

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000375RLK-Pelle_LRR-III (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
RLK-Pelle_LRR-VII-1 (from iTAK)
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_22368
PF13855.5LRR_8168227
PF00560.32LRR_1294310
PF13855.5LRR_8411469
PF13855.5LRR_8508567
PF07714.16Pkinase_Tyr786870

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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