PH01000510G0060's details annotation
1.Annotation
ICBR annotation: kelch repeat protein, putative, expressed
Blast result AT3G05420 : 6.00E-109
Blast annotation: acyl-CoA binding protein 4
2.Location
Scaffold: PH01000510
Strand: +
| Region | Start | End |
| gene | 30836 | 40390 |
| mRNA | 30836 | 40390 |
| exon | 30836 | 31047 |
| exon | 31401 | 31586 |
| exon | 31798 | 31875 |
| exon | 32294 | 32360 |
| exon | 32443 | 32504 |
| exon | 32624 | 32763 |
| exon | 33087 | 33213 |
| exon | 33295 | 33409 |
| exon | 33631 | 33719 |
| exon | 38333 | 38476 |
| exon | 38577 | 38702 |
| exon | 39201 | 39260 |
| exon | 39793 | 40390 |
| CDS | 31042 | 31047 |
| CDS | 31401 | 31586 |
| CDS | 31798 | 31875 |
| CDS | 32294 | 32360 |
| CDS | 32443 | 32504 |
| CDS | 32624 | 32763 |
| CDS | 33087 | 33213 |
| CDS | 33295 | 33409 |
| CDS | 33631 | 33719 |
| CDS | 38333 | 38476 |
| CDS | 38577 | 38702 |
| CDS | 39201 | 39260 |
| CDS | 39793 | 39954 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000118 | |
| coexpression network | CFinderM000336 | C2C2-LSD Transcription_Regulator(from iTAK) LSD Transcription_Regulator(from PlantTFDB) cellulose biosynthetic process, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001116 | protein folding, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001117 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13854.5 | Kelch_5 | 58 | 91 |
| PF13415.5 | Kelch_3 | 145 | 193 |
| PF13415.5 | Kelch_3 | 198 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.