PH01000514G0160's details annotation
1.Annotation
ICBR annotation: nuclear protein ZAP-related, putative, expressed
Blast result AT5G62760 : 4.50E-87
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000514
Strand: -
| Region | Start | End |
| gene | 76265 | 93198 |
| mRNA | 76265 | 93198 |
| exon | 76265 | 77662 |
| exon | 78543 | 78629 |
| exon | 79001 | 79203 |
| exon | 81202 | 81313 |
| exon | 81380 | 81424 |
| exon | 81518 | 81622 |
| exon | 83935 | 83979 |
| exon | 84555 | 84680 |
| exon | 84899 | 84949 |
| exon | 87141 | 87196 |
| exon | 87698 | 87767 |
| exon | 88967 | 89071 |
| exon | 89214 | 89326 |
| exon | 90160 | 90340 |
| exon | 90455 | 90810 |
| exon | 90907 | 93198 |
| CDS | 77492 | 77662 |
| CDS | 78543 | 78629 |
| CDS | 79001 | 79203 |
| CDS | 81202 | 81313 |
| CDS | 81380 | 81424 |
| CDS | 81518 | 81622 |
| CDS | 83935 | 83979 |
| CDS | 84555 | 84680 |
| CDS | 84899 | 84949 |
| CDS | 87141 | 87196 |
| CDS | 87698 | 87767 |
| CDS | 88967 | 89071 |
| CDS | 89214 | 89326 |
| CDS | 90160 | 90340 |
| CDS | 90455 | 90810 |
| CDS | 90907 | 91093 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000389 | protein folding, response to heat, unfolded protein binding, |
| coexpression network | CFinderM000426 | nucleus, |
| coexpression network | CFinderM000555 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.